Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5042

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1617376 to 1619999 13409 mRNA_5042: 13410 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1620186 to 1624463 13410 mRNA_5043: 13411 - PIRSF--PIRSF022976, at 1624798 to 1625839 13411

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,619,333 - 13409 mRNA_5041 0.75 1.1
1,619,658 + 13409 mRNA_5041 0.87 -0.2
1,619,858 + 0.9
1,620,261 - 0.4
1,620,537 - 0.4
1,620,542 + -0.1
1,621,013 + 13410 mRNA_5042 0.19 1.2
1,621,260 - 13410 mRNA_5042 0.25 0.1
1,621,949 - 13410 mRNA_5042 0.41 -0.6
1,622,313 - 13410 mRNA_5042 0.50 2.1
1,622,389 - 13410 mRNA_5042 0.51 0.1
1,622,432 - 13410 mRNA_5042 0.53 -0.6
1,622,433 - 13410 mRNA_5042 0.53 0.7
1,622,527 - 13410 mRNA_5042 0.55 -0.9
1,622,582 + 13410 mRNA_5042 0.56 -0.8
1,622,604 + 13410 mRNA_5042 0.57 -0.5
1,622,897 + 13410 mRNA_5042 0.63 1.0
1,623,645 + 13410 mRNA_5042 0.81 -1.8
1,623,670 + 13410 mRNA_5042 0.81 0.1
1,623,804 + 13410 mRNA_5042 0.85 -1.1
1,623,871 + 13410 mRNA_5042 0.86 -1.3
1,624,137 + -1.2
1,624,501 - 1.2
1,624,529 - -0.3
1,624,645 + -0.2
1,624,669 + 2.1
1,624,797 - 1.4
1,625,072 - 13411 mRNA_5043 0.26 -0.9
1,625,365 - 13411 mRNA_5043 0.54 -1.4
1,625,372 + 13411 mRNA_5043 0.55 -2.7