Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5023

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5022: 13390 - Hypothetical Protein, at 1571502 to 1572574 13390 mRNA_5023: 13391 - K17866 DPH2 diphthamide biosynthesis protein 2, at 1572815 to 1575164 13391 mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1575656 to 1580280 13392

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,571,842 - 13390 mRNA_5022 0.32 1.2
1,571,863 + 13390 mRNA_5022 0.34 -1.0
1,571,863 + 13390 mRNA_5022 0.34 -0.5
1,572,156 - 13390 mRNA_5022 0.61 1.5
1,574,337 + 13391 mRNA_5023 0.65 -2.5
1,574,752 - 13391 mRNA_5023 0.82 -0.9
1,574,905 - 13391 mRNA_5023 0.89 -0.9
1,575,050 - -2.4
1,575,206 + 0.1
1,575,209 - 1.0
1,575,343 - -0.6
1,575,349 + 0.7
1,575,360 - -0.0
1,575,364 - -0.4
1,575,428 - 1.8
1,575,440 + -1.0
1,575,446 - -0.4
1,575,453 - -1.6
1,575,453 + 0.8
1,575,460 - 1.0
1,575,464 - 0.2
1,575,464 + -1.5
1,575,467 - -0.0
1,575,469 + -2.0
1,575,473 + -0.6
1,575,499 - -0.8
1,575,502 + -0.0
1,575,508 + 0.1
1,575,549 + -0.0
1,575,624 - 0.2
1,575,665 + -0.8
1,575,801 + 0.2