Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5010

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1531296 to 1533936 13377 mRNA_5010: 13378 - K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37, at 1534443 to 1540178 13378 mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1540350 to 1542527 13379

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,533,478 + 13377 mRNA_5009 0.83 -0.7
1,533,627 + 13377 mRNA_5009 0.88 1.1
1,533,912 - -0.4
1,534,064 - 0.2
1,534,071 + -0.2
1,534,182 - 0.2
1,534,195 - 0.9
1,534,196 - -0.5
1,534,200 - -0.1
1,534,203 - 0.0
1,534,204 + -0.4
1,534,212 + 0.2
1,534,231 + 0.1
1,534,508 - 1.3
1,534,511 + 0.6
1,534,799 - -0.1
1,535,097 + 13378 mRNA_5010 0.11 0.7
1,535,494 + 13378 mRNA_5010 0.18 -0.3
1,535,519 + 13378 mRNA_5010 0.19 0.6
1,535,529 - 13378 mRNA_5010 0.19 1.7
1,535,688 + 13378 mRNA_5010 0.22 0.1
1,535,846 + 13378 mRNA_5010 0.24 -0.5
1,535,962 - 13378 mRNA_5010 0.26 -1.5
1,535,972 - 13378 mRNA_5010 0.27 -0.2
1,536,006 + 13378 mRNA_5010 0.27 1.5
1,536,128 - 13378 mRNA_5010 0.29 0.1
1,536,148 + 13378 mRNA_5010 0.30 0.3
1,536,148 - 13378 mRNA_5010 0.30 -0.4
1,536,268 - 13378 mRNA_5010 0.32 -1.6
1,536,332 - 13378 mRNA_5010 0.33 0.3
1,536,356 + 13378 mRNA_5010 0.33 1.0
1,536,870 - 13378 mRNA_5010 0.42 -0.2
1,536,959 - 13378 mRNA_5010 0.44 0.2
1,537,104 + 13378 mRNA_5010 0.46 -0.4
1,537,283 + 13378 mRNA_5010 0.50 -0.9
1,537,448 + 13378 mRNA_5010 0.52 -0.9
1,537,705 + 13378 mRNA_5010 0.57 0.1
1,537,781 + 13378 mRNA_5010 0.58 -0.5
1,537,865 + 13378 mRNA_5010 0.60 0.2
1,537,869 + 13378 mRNA_5010 0.60 1.3
1,538,146 - 13378 mRNA_5010 0.65 1.0
1,538,285 - 13378 mRNA_5010 0.67 -0.2
1,538,508 + 13378 mRNA_5010 0.71 -0.7
1,538,620 + 13378 mRNA_5010 0.73 -1.0
1,538,792 + 13378 mRNA_5010 0.76 -0.3
1,538,855 - 13378 mRNA_5010 0.77 -1.8
1,538,869 - 13378 mRNA_5010 0.77 0.5
1,539,165 - 13378 mRNA_5010 0.82 -0.5
1,539,305 - 13378 mRNA_5010 0.85 0.9
1,539,654 - 0.3
1,539,871 + -1.0
1,539,904 - -0.3
1,540,236 - -0.2
1,541,074 + 13379 mRNA_5011 0.33 -1.0
1,541,075 + 13379 mRNA_5011 0.33 -0.7
1,541,101 - 13379 mRNA_5011 0.34 -0.7
1,541,111 + 13379 mRNA_5011 0.35 -2.0