Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5005

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1522802 to 1524731 13373 mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1525001 to 1528336 13374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,522,417 - 1.0
1,522,445 - 0.2
1,522,460 + -1.1
1,522,557 - 0.3
1,522,587 - -1.1
1,522,596 + 0.3
1,522,597 - 0.5
1,522,597 + -1.1
1,522,599 + 0.6
1,522,603 + 0.1
1,522,612 + 2.0
1,522,621 + -0.7
1,522,621 + -0.5
1,522,625 - 0.7
1,522,642 + 2.2
1,522,774 - -1.2
1,523,174 + 13373 mRNA_5005 0.19 0.5
1,524,802 - -0.8
1,524,813 + 1.7
1,524,945 - 0.1
1,525,098 - -1.7
1,525,109 + -1.5
1,525,125 + -0.7
1,525,264 - 0.0
1,525,462 - 13374 mRNA_5006 0.14 -0.8