Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4955

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4954: 13322 - Hypothetical Protein, at 1391510 to 1392423 13322 mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1393172 to 1398147 13323 mRNA_4956: 13324 - HMMPfam-SMI1 / KNR4 family (SUKH-1)-PF09346, at 1398453 to 1400732 13324

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,392,173 + 13322 mRNA_4954 0.73 1.7
1,392,254 + 13322 mRNA_4954 0.81 1.2
1,392,260 + 13322 mRNA_4954 0.82 -0.0
1,392,261 + 13322 mRNA_4954 0.82 -1.5
1,392,267 - 13322 mRNA_4954 0.83 -1.1
1,392,308 + 13322 mRNA_4954 0.87 0.6
1,392,309 - 13322 mRNA_4954 0.87 -0.1
1,392,336 + 0.4
1,392,359 - -0.6
1,392,423 - -0.7
1,392,436 - -1.8
1,392,472 - 0.8
1,392,474 + 0.3
1,392,476 - -1.2
1,392,477 + -1.7
1,392,480 - 1.2
1,392,484 + 0.1
1,392,494 + -0.5
1,392,497 - 1.4
1,392,508 - 2.1
1,392,516 + 0.4
1,392,653 + -0.1
1,392,783 - 0.5
1,392,921 + -1.6
1,392,940 + -0.8
1,393,074 + 1.7
1,394,233 - 13323 mRNA_4955 0.21 2.7
1,395,137 + 13323 mRNA_4955 0.39 0.1
1,398,251 - 0.2
1,398,383 + -0.0
1,398,564 - -2.2
1,398,567 + -1.6