Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4940

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1365348 to 1366647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1367349 to 1367987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1368414 to 1369977 13309

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,366,399 - 13307 mRNA_4939 0.81 0.6
1,366,547 + 1.7
1,366,566 + -0.4
1,366,575 + -1.3
1,366,577 - -0.3
1,366,609 + 0.5
1,366,682 - -0.1
1,366,683 + -0.4
1,366,687 + 2.0
1,366,701 + -0.5
1,366,715 + 0.8
1,366,716 + 0.1
1,366,719 - 2.7
1,366,761 - 0.0
1,366,762 + -1.3
1,366,781 + 0.1
1,366,785 - -0.6
1,366,910 + 0.5
1,366,940 - 0.7
1,367,041 - 0.1
1,367,056 - -1.8
1,367,480 + 13308 mRNA_4940 0.21 -0.6
1,367,585 - 13308 mRNA_4940 0.37 -0.1
1,367,776 + 13308 mRNA_4940 0.67 -1.7
1,367,820 + 13308 mRNA_4940 0.74 1.1
1,368,074 - -0.0
1,368,150 + -0.9
1,368,211 + -1.3
1,368,220 + -2.7
1,368,221 - -2.1
1,368,345 - -1.0
1,368,631 - 13309 mRNA_4941 0.14 0.6
1,368,647 + 13309 mRNA_4941 0.15 0.8
1,368,649 - 13309 mRNA_4941 0.15 -0.7
1,368,682 + 13309 mRNA_4941 0.17 -0.4
1,368,785 + 13309 mRNA_4941 0.24 0.3
1,368,824 + 13309 mRNA_4941 0.26 0.2
1,368,920 - 13309 mRNA_4941 0.32 1.0
1,368,929 + 13309 mRNA_4941 0.33 -0.2