Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4936

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1356416 to 1359547 13303 mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1359714 to 1362398 13304 mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1362763 to 1363546 13305

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,359,138 - 13303 mRNA_4935 0.87 0.9
1,359,182 - 13303 mRNA_4935 0.88 1.6
1,359,374 - 1.3
1,359,392 + 0.6
1,359,692 - -0.0
1,359,806 - -0.6
1,359,843 + -3.5
1,359,882 - -1.7
1,359,926 - 1.3
1,359,957 + -1.5
1,360,255 - 13304 mRNA_4936 0.20 1.6
1,360,387 + 13304 mRNA_4936 0.25 0.8
1,360,586 + 13304 mRNA_4936 0.32 2.1
1,360,809 + 13304 mRNA_4936 0.41 -3.0
1,361,028 - 13304 mRNA_4936 0.49 -0.7
1,361,736 - 13304 mRNA_4936 0.75 0.9
1,361,750 - 13304 mRNA_4936 0.76 0.3
1,361,851 + 13304 mRNA_4936 0.80 -1.0
1,361,890 + 13304 mRNA_4936 0.81 0.4
1,362,019 - 13304 mRNA_4936 0.86 -0.4
1,362,033 + 13304 mRNA_4936 0.86 1.6
1,362,109 - 13304 mRNA_4936 0.89 -0.5
1,362,150 + -2.9
1,362,184 - 0.8
1,362,208 - 2.2
1,362,323 - 0.5
1,362,340 + 1.2
1,362,347 - 0.8
1,362,477 + 0.7
1,362,477 - -0.4
1,362,640 - 0.9
1,362,755 + -0.4