Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4927

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1328317 to 1334558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1334760 to 1336928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1337111 to 1340226 13296

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,334,352 + 0.5
1,334,490 - 0.6
1,334,496 + -0.3
1,334,502 + 1.5
1,334,509 - 0.1
1,334,510 - -1.8
1,334,510 + 1.1
1,334,516 - -0.4
1,334,517 - -0.3
1,334,519 + 1.4
1,334,519 - -0.2
1,334,522 + -1.1
1,334,524 + 0.7
1,334,526 + -1.2
1,334,528 + 0.1
1,334,584 - -0.4
1,334,694 - -0.5
1,334,699 + -0.8
1,334,703 + -2.0
1,334,705 + -0.1
1,334,719 + -1.6
1,334,766 - -0.3
1,334,833 - 1.8
1,334,865 - -2.9
1,334,867 - -0.3
1,334,879 + -1.1
1,334,881 - 0.5
1,334,892 - -1.6
1,334,948 - 0.7
1,335,010 - 13295 mRNA_4927 0.12 -0.0
1,335,161 - 13295 mRNA_4927 0.18 0.3
1,335,311 + 13295 mRNA_4927 0.25 -1.6
1,335,606 - 13295 mRNA_4927 0.39 0.1
1,335,612 + 13295 mRNA_4927 0.39 -2.6
1,335,718 + 13295 mRNA_4927 0.44 0.1
1,336,747 + -0.1
1,336,783 + 0.9
1,336,915 - 0.1
1,337,080 - 0.7
1,337,147 - 0.0
1,337,228 - -0.9
1,337,672 - 13296 mRNA_4928 0.18 1.1
1,337,758 - 13296 mRNA_4928 0.21 -0.5
1,337,839 - 13296 mRNA_4928 0.23 -1.4