Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4921

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1311441 to 1312877 13288 mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1313385 to 1315387 13289 mRNA_4922: 13290 - K18670 YAK1 dual specificity protein kinase YAK1, at 1315814 to 1320351 13290

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,312,895 - 0.7
1,312,904 + 0.1
1,313,048 + -0.9
1,313,050 + 0.7
1,313,052 - 0.9
1,313,058 - 1.5
1,313,086 + 0.2
1,313,093 + -0.6
1,313,098 + 0.5
1,313,149 - 1.0
1,313,245 - -0.1
1,313,374 + 0.3
1,313,374 + 0.1
1,313,509 - 0.4
1,313,663 - 13289 mRNA_4921 0.14 0.3
1,313,833 + 13289 mRNA_4921 0.22 -0.7
1,314,117 - 13289 mRNA_4921 0.37 1.3
1,314,154 - 13289 mRNA_4921 0.38 1.6
1,314,185 + 13289 mRNA_4921 0.40 0.2
1,314,260 + 13289 mRNA_4921 0.44 -0.9
1,314,442 - 13289 mRNA_4921 0.53 2.6
1,314,578 + 13289 mRNA_4921 0.60 0.1
1,314,643 - 13289 mRNA_4921 0.63 -0.0
1,314,964 + 13289 mRNA_4921 0.79 0.1
1,315,111 - 13289 mRNA_4921 0.86 -1.3
1,315,438 + -0.6
1,315,708 + -0.1
1,316,226 + 0.3
1,316,304 - 13290 mRNA_4922 0.11 0.2