Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4919

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4918: 13286 - K00327 POR NADPH-ferrihemoprotein reductase, at 1301250 to 1303860 13286 mRNA_4919: 13287 - K01768 E4.6.1.1 adenylate cyclase, at 1304232 to 1310691 13287 mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1311441 to 1312877 13288

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,303,917 - 0.9
1,303,919 + -0.1
1,303,932 - 3.3
1,303,935 - 0.4
1,303,936 + -0.8
1,303,936 + 0.1
1,303,936 - 0.7
1,303,938 - 0.0
1,303,952 - 0.2
1,303,954 - 0.7
1,303,954 - -0.1
1,303,957 - 0.9
1,303,964 + -0.5
1,303,969 + -3.9
1,303,970 + -0.9
1,303,971 - 0.5
1,303,971 + -0.4
1,303,981 + 1.1
1,303,988 - 0.3
1,304,108 + -0.3
1,304,115 + -1.8
1,304,117 + -1.4
1,304,208 + 1.5
1,304,407 - -2.3
1,304,561 + 2.0
1,305,009 + 13287 mRNA_4919 0.12 1.2
1,305,823 - 13287 mRNA_4919 0.25 2.1
1,305,981 - 13287 mRNA_4919 0.27 1.4
1,306,055 - 13287 mRNA_4919 0.28 1.3
1,306,215 - 13287 mRNA_4919 0.31 0.4
1,306,318 - 13287 mRNA_4919 0.32 0.1
1,306,630 - 13287 mRNA_4919 0.37 1.7
1,306,915 + 13287 mRNA_4919 0.42 1.9
1,306,992 - 13287 mRNA_4919 0.43 -0.0
1,307,048 - 13287 mRNA_4919 0.44 1.2
1,307,066 + 13287 mRNA_4919 0.44 2.0
1,307,663 + 13287 mRNA_4919 0.53 0.4
1,307,691 + 13287 mRNA_4919 0.54 0.9
1,307,740 + 13287 mRNA_4919 0.54 4.1
1,307,820 - 13287 mRNA_4919 0.56 1.2
1,308,112 + 13287 mRNA_4919 0.60 2.8
1,308,189 + 13287 mRNA_4919 0.61 0.2
1,308,521 + 13287 mRNA_4919 0.66 1.0
1,308,769 + 13287 mRNA_4919 0.70 1.1
1,308,901 - 13287 mRNA_4919 0.72 -0.4
1,308,957 + 13287 mRNA_4919 0.73 0.3
1,308,961 - 13287 mRNA_4919 0.73 1.7
1,309,252 - 13287 mRNA_4919 0.78 0.7
1,309,528 - 13287 mRNA_4919 0.82 -0.1
1,309,745 - 13287 mRNA_4919 0.85 2.4
1,309,823 - 13287 mRNA_4919 0.87 1.8
1,309,844 - 13287 mRNA_4919 0.87 1.3
1,310,167 - 0.5
1,310,422 - 1.5
1,310,462 + 2.8
1,310,557 - 0.5
1,310,726 - -0.3
1,310,733 - 0.2
1,310,735 - -0.1
1,310,747 - 1.4
1,310,750 - 1.1
1,310,876 + 2.3
1,310,882 - -1.5
1,310,884 + -0.9
1,311,007 + -1.0
1,311,028 + 1.3
1,311,045 - -0.5
1,311,049 + 0.3
1,311,167 + 0.9
1,311,268 - -0.4
1,311,293 - 0.7
1,311,307 - 0.8
1,311,310 - 0.9
1,311,319 - 0.6
1,311,323 + 0.6