Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4760

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940381 to 941157 13127 mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941332 to 944070 13128 mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944386 to 945694 13129

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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940,648 + 13127 mRNA_4759 0.34 1.1
940,692 - 13127 mRNA_4759 0.40 0.4
940,762 - 13127 mRNA_4759 0.49 -0.3
940,983 - 13127 mRNA_4759 0.77 0.6
941,157 + -2.1
941,390 - -0.7
941,391 + 1.6
941,396 + 1.0
941,609 + 13128 mRNA_4760 0.10 2.0
941,736 + 13128 mRNA_4760 0.15 -0.7
941,785 + 13128 mRNA_4760 0.17 -1.0
942,025 - 13128 mRNA_4760 0.25 0.3
942,032 + 13128 mRNA_4760 0.26 -2.1
942,241 + 13128 mRNA_4760 0.33 0.3
942,308 + 13128 mRNA_4760 0.36 1.5
942,354 - 13128 mRNA_4760 0.37 -1.0
942,358 + 13128 mRNA_4760 0.37 0.5
943,038 + 13128 mRNA_4760 0.62 -0.2
943,130 + 13128 mRNA_4760 0.66 -1.0
943,292 - 13128 mRNA_4760 0.72 -0.9
943,519 - 13128 mRNA_4760 0.80 0.8
943,828 + 0.9
943,971 + 0.1
944,076 - 0.1
944,157 - -0.1
944,246 + -1.1
944,250 - -0.6
944,263 - 0.9
944,268 + -2.0
944,279 + 2.9
944,415 - 0.8
945,019 - 13129 mRNA_4761 0.48 1.8