Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4735

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4734: 13102 - Hypothetical Protein, at 883185 to 884845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885330 to 888560 13103 mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888664 to 889665 13104

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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884,338 - 13102 mRNA_4734 0.69 0.6
884,713 - -2.0
884,958 + 0.1
885,041 - -0.1
885,160 - 0.2
885,162 - 0.7
885,165 + 0.3
885,179 - 0.4
885,445 + -0.4
885,462 - 0.1
885,469 - 0.1
885,489 + -0.6
885,597 - 0.8
885,601 - 1.4
885,606 + -1.2
885,613 + 0.8
885,620 + -1.1
885,627 + 0.5
885,650 + 0.5
885,790 - 13103 mRNA_4735 0.14 1.4
885,812 + 13103 mRNA_4735 0.15 -1.0
885,927 + 13103 mRNA_4735 0.18 0.8
885,937 - 13103 mRNA_4735 0.19 -0.6
886,010 - 13103 mRNA_4735 0.21 0.4
886,011 + 13103 mRNA_4735 0.21 0.4
886,044 + 13103 mRNA_4735 0.22 1.8
886,061 + 13103 mRNA_4735 0.23 -1.5
886,204 - 13103 mRNA_4735 0.27 -1.1
886,512 - 13103 mRNA_4735 0.37 0.0
886,639 + 13103 mRNA_4735 0.41 0.2
886,791 - 13103 mRNA_4735 0.45 1.3
886,805 - 13103 mRNA_4735 0.46 2.4
886,827 + 13103 mRNA_4735 0.46 2.1
887,103 - 13103 mRNA_4735 0.55 0.8
887,127 - 13103 mRNA_4735 0.56 -1.0
887,208 - 13103 mRNA_4735 0.58 0.7
887,338 - 13103 mRNA_4735 0.62 -0.5
887,625 - 13103 mRNA_4735 0.71 0.5
887,819 + 13103 mRNA_4735 0.77 0.5
887,840 - 13103 mRNA_4735 0.78 -0.4
887,900 + 13103 mRNA_4735 0.80 -0.6
887,904 + 13103 mRNA_4735 0.80 0.2
887,945 + 13103 mRNA_4735 0.81 0.9
887,946 - 13103 mRNA_4735 0.81 0.9
888,080 - 13103 mRNA_4735 0.85 -2.2
888,117 - 13103 mRNA_4735 0.86 -1.4
888,121 + 13103 mRNA_4735 0.86 0.7
888,396 + 1.4
888,397 - 0.6
888,534 + 0.4
888,573 - -1.1
888,587 + 0.7
888,817 - 13104 mRNA_4736 0.15 -0.6
889,039 + 13104 mRNA_4736 0.37 0.0
889,192 - 13104 mRNA_4736 0.53 -0.6
889,282 - 13104 mRNA_4736 0.62 0.6
889,296 + 13104 mRNA_4736 0.63 0.1
889,297 - 13104 mRNA_4736 0.63 -0.2
889,301 - 13104 mRNA_4736 0.64 0.7
889,319 + 13104 mRNA_4736 0.65 1.1
889,440 + 13104 mRNA_4736 0.77 -0.5