Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4727

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866956 to 867873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868153 to 868831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868902 to 870638 13096

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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867,156 + 13094 mRNA_4726 0.22 -2.1
867,434 + 13094 mRNA_4726 0.52 0.1
867,445 - 13094 mRNA_4726 0.53 -0.5
867,448 + 13094 mRNA_4726 0.54 -0.2
867,468 + 13094 mRNA_4726 0.56 0.7
867,554 - 13094 mRNA_4726 0.65 1.3
867,867 - 0.4
867,880 - 1.5
867,923 - 0.9
868,012 - 0.3
868,303 + 13095 mRNA_4727 0.22 -1.6
868,448 + 13095 mRNA_4727 0.43 -1.7
868,595 + 13095 mRNA_4727 0.65 1.1
868,598 + 13095 mRNA_4727 0.66 -0.7
868,608 - 13095 mRNA_4727 0.67 0.2
868,615 - 13095 mRNA_4727 0.68 -1.0
868,719 - 13095 mRNA_4727 0.83 -1.9
868,727 - 13095 mRNA_4727 0.85 -0.0
868,799 + -0.8
868,864 - 0.4
868,873 - 0.3
868,885 + 0.2
869,138 - 13096 mRNA_4728 0.14 -1.3
869,611 - 13096 mRNA_4728 0.41 1.7
869,768 - 13096 mRNA_4728 0.50 0.3