Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4719

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849310 to 850936 13087 mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851220 to 854422 13088

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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848,387 + 13086 mRNA_4718 0.69 0.6
848,394 - 13086 mRNA_4718 0.70 -2.5
848,397 - 13086 mRNA_4718 0.70 0.8
848,954 - -0.5
848,954 - -0.3
849,097 - -1.8
849,256 - -2.4
849,260 + -1.2
849,275 + 0.7
849,279 - -1.6
849,280 - -0.0
849,367 + 0.4
849,381 + -0.9
849,401 - -0.6
849,404 - 0.1
849,431 - 2.0
849,434 + 1.0
849,570 - 13087 mRNA_4719 0.16 0.2
849,598 + 13087 mRNA_4719 0.18 0.3
849,621 + 13087 mRNA_4719 0.19 -0.5
849,702 - 13087 mRNA_4719 0.24 0.6
849,743 - 13087 mRNA_4719 0.27 2.0
849,802 + 13087 mRNA_4719 0.30 -0.2
849,822 - 13087 mRNA_4719 0.31 -1.0
849,826 + 13087 mRNA_4719 0.32 0.9
850,012 + 13087 mRNA_4719 0.43 -1.0
850,128 - 13087 mRNA_4719 0.50 -1.3
850,133 - 13087 mRNA_4719 0.51 2.1
850,418 + 13087 mRNA_4719 0.68 0.5
850,421 - 13087 mRNA_4719 0.68 -0.2
850,551 - 13087 mRNA_4719 0.76 -0.4
850,993 - 0.9
851,104 - 0.2
851,332 - -1.3
851,602 - 13088 mRNA_4720 0.12 -1.7
851,665 - 13088 mRNA_4720 0.14 0.7