Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4713

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080 mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234 13081 mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838359 to 840435 13082

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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833,589 - 13080 mRNA_4712 0.85 -0.7
833,737 + 13080 mRNA_4712 0.90 -0.2
833,744 - 13080 mRNA_4712 0.90 0.6
833,799 + -1.1
833,805 - -1.5
833,861 - -0.9
833,877 - -1.3
833,888 + -1.1
833,889 - -1.5
833,892 + 0.3
833,907 + -1.1
833,908 - -1.4
833,909 + 0.1
833,915 - -0.9
834,029 + 0.1
834,035 - -1.4
834,045 - 0.1
834,181 - -1.1
834,190 - 0.0
834,200 - -0.4
834,201 - -1.2
834,201 + -0.2
834,201 + -1.2
834,205 + 0.2
834,216 + 0.6
834,222 + -0.3
834,344 - -1.8
834,350 + 0.9
834,474 + 0.1
834,489 + 0.2
835,636 - 13081 mRNA_4713 0.32 -0.1
835,915 - 13081 mRNA_4713 0.40 -0.9
835,932 - 13081 mRNA_4713 0.40 -0.2
835,981 + 13081 mRNA_4713 0.41 0.3
836,224 + 13081 mRNA_4713 0.48 -0.1
836,413 + 13081 mRNA_4713 0.53 -0.1
836,426 - 13081 mRNA_4713 0.53 -1.8
836,482 + 13081 mRNA_4713 0.54 1.0
836,573 + 13081 mRNA_4713 0.57 0.1
836,974 - 13081 mRNA_4713 0.67 0.7
837,443 + 13081 mRNA_4713 0.79 -1.9
837,482 + 13081 mRNA_4713 0.80 1.1
837,544 + 13081 mRNA_4713 0.82 0.8
838,426 + -0.4
838,586 + 13082 mRNA_4714 0.11 -0.3
838,619 + 13082 mRNA_4714 0.13 -1.9
838,662 + 13082 mRNA_4714 0.15 -0.9