Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4708

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4707: 13075 - KOG4431 Uncharacterized protein, induced by hypoxia , at 818806 to 819404 13075 mRNA_4708: 13076 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 819652 to 821476 13076 mRNA_4709: 13077 - Hypothetical Protein, at 821817 to 823479 13077

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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818,779 - 0.5
818,783 + -0.0
818,784 + 0.0
818,903 - 13075 mRNA_4707 0.16 -1.1
819,086 + 13075 mRNA_4707 0.47 1.4
819,219 - 13075 mRNA_4707 0.69 -1.1
819,501 - -0.6
819,512 - 0.4
819,516 + 0.9
819,521 - -0.2
819,523 + 0.9
819,534 + 0.0
819,648 - -1.0
819,648 - 0.6
819,781 + 0.3
819,870 + 13076 mRNA_4708 0.12 -0.7
819,949 + 13076 mRNA_4708 0.16 0.5
819,972 - 13076 mRNA_4708 0.18 -2.3
820,105 - 13076 mRNA_4708 0.25 -0.3
820,237 - 13076 mRNA_4708 0.32 0.2
820,609 - 13076 mRNA_4708 0.52 -2.6
820,668 - 13076 mRNA_4708 0.56 -1.3
820,724 - 13076 mRNA_4708 0.59 -2.6
821,212 + 13076 mRNA_4708 0.85 -1.2
821,364 + -0.3
821,450 - 0.2
822,080 - 13077 mRNA_4709 0.16 -0.5
822,199 - 13077 mRNA_4709 0.23 -4.9
822,252 - 13077 mRNA_4709 0.26 -1.3
822,303 - 13077 mRNA_4709 0.29 -0.3