Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4660

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4659: 13027 - KOG1134 Uncharacterized conserved protein, at 709545 to 713167 13027 mRNA_4660: 13028 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2, at 713553 to 716343 13028 mRNA_4661: 13029 - K20180 VPS16 vacuolar protein sorting-associated protein 16, at 716633 to 720333 13029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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712,599 + 13027 mRNA_4659 0.84 0.2
712,884 - -1.4
712,901 - 0.4
712,918 - -0.4
712,932 + -0.9
713,060 + -0.0
713,213 + 0.1
713,215 + -0.3
713,216 - 0.4
713,216 - -1.3
713,223 + 1.6
713,225 - 0.7
713,239 + -1.3
713,244 - 0.1
713,249 - -0.0
713,249 - -0.4
713,301 + 1.2
713,303 + 0.9
713,312 - -1.5
713,326 - 1.1
713,328 - -0.2
713,329 - -0.9
713,331 + 0.6
713,331 + 0.1
713,341 + -0.4
713,348 - -0.8
713,351 + 1.8
713,360 - -0.2
713,367 + -1.2
713,382 - 0.7
713,391 + 1.7
713,487 - 1.1
713,523 - 0.8
713,530 - -0.3
713,695 - -0.4
713,990 - 13028 mRNA_4660 0.16 -2.9
714,137 + 13028 mRNA_4660 0.21 -0.4
714,882 + 13028 mRNA_4660 0.48 1.1
716,208 + -2.4
716,355 - 1.1
716,359 - -0.9
716,362 + 0.1
716,392 + 2.3
716,495 - -0.2
716,495 - 0.6
716,506 - 0.4
716,507 - -0.0
716,512 + -0.2
716,513 - -0.9
716,514 - 0.1
716,517 + -0.4
716,518 + -2.1
716,523 + -0.7
716,525 + -0.0
716,526 + -0.5
716,527 + 1.4
716,528 + -0.1
716,532 + 0.4
716,532 + -0.8
716,534 + -1.1