Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4608

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571268 to 571973 12975 mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281 12977

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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571,680 + 12975 mRNA_4607 0.58 0.3
571,924 - 0.2
572,085 + 0.0
572,100 + 2.4
572,113 - 1.6
572,118 - 0.5
572,151 + -1.1
572,179 + 0.4
572,269 + -0.6
572,593 - -0.5
572,830 - -0.1
573,320 + 12976 mRNA_4608 0.27 -0.5
574,297 - 12976 mRNA_4608 0.62 0.1
574,840 - 12976 mRNA_4608 0.81 0.3
575,011 + 12976 mRNA_4608 0.87 0.7
575,174 - -1.1
575,193 + -0.2
575,483 - 0.9
575,504 - 2.2
575,510 - 0.0
575,511 + -0.6
575,516 - 1.1
575,519 - -1.0
575,520 - 0.7
575,521 + 1.0
575,538 - -1.5
575,553 - -0.5
575,559 + -1.0
575,562 - -0.5
575,611 - -0.3
575,613 + 1.5
575,616 + -1.6
575,617 - 0.3
575,629 + 0.5
575,636 - 1.5
575,640 - 0.8
575,643 + -0.6
575,643 + 2.0
575,646 - 1.9
575,651 + 0.6
575,656 + -0.3
575,657 + 0.9
575,666 + -0.1
575,687 - -0.1
575,689 + -0.7
575,753 - 0.2
575,908 + 12977 mRNA_4609 0.11 0.8
575,912 + 12977 mRNA_4609 0.12 -0.6
575,915 - 12977 mRNA_4609 0.12 1.0
575,922 - 12977 mRNA_4609 0.12 0.1
575,941 - 12977 mRNA_4609 0.14 1.0
575,948 + 12977 mRNA_4609 0.14 0.6