Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4570

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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490,963 - -0.6
490,972 + -0.5
490,976 + 0.8
490,980 + -0.6
490,983 - -1.5
490,990 + -1.8
491,029 + 0.8
491,030 - -0.2
491,040 + 0.4
491,041 - -0.5
491,133 - 1.8
491,145 + 0.6
491,150 - -0.5
491,181 + -1.0
491,193 + 0.0
491,199 - 0.4
491,280 + 0.4
491,314 + 12938 mRNA_4570 0.12 -0.9
491,318 - 12938 mRNA_4570 0.12 0.8
491,442 - 12938 mRNA_4570 0.22 -0.9
491,453 - 12938 mRNA_4570 0.23 -0.1
491,542 - 12938 mRNA_4570 0.31 -2.8
491,568 - 12938 mRNA_4570 0.33 -0.2
491,807 - 12938 mRNA_4570 0.53 0.2
491,824 + 12938 mRNA_4570 0.54 -0.1
491,977 - 12938 mRNA_4570 0.67 -0.1
491,987 - 12938 mRNA_4570 0.68 -0.7
491,991 + 12938 mRNA_4570 0.68 -1.1
492,152 + 12938 mRNA_4570 0.82 -1.2
492,262 + 0.3
492,286 + -0.1
492,298 + -0.9
492,316 + -0.3
492,426 - -0.1
492,438 - -3.1
492,449 - 0.1
492,459 + -0.1
492,569 + 0.9
492,576 + -0.3
492,581 - 0.7
492,587 - -0.2
492,591 - -0.2
492,598 - -0.8
492,604 - -1.6
492,610 + -1.3
492,611 + -0.1
492,612 + -0.5
492,707 - -2.5
492,717 - 0.1
492,726 + 1.4
492,726 - -0.1
492,726 + 0.3
492,728 + -0.6
492,740 + 0.4
492,748 - -0.6
492,748 + -0.1
492,753 + 1.9
492,754 + -0.8
492,758 - -0.3
492,776 - 0.3
492,777 - 0.1
492,783 - 0.5
492,799 - -0.2
492,799 + 0.7
492,800 - -0.3
492,803 - -0.5
492,831 - 1.0
492,832 - 0.3
492,841 + 0.1
492,849 - -0.2
492,853 + 1.3
492,859 - -0.6
492,863 + -1.8
492,863 + 0.1
492,872 + -1.4
492,873 + 0.6
492,873 - -0.1
492,875 + 0.2
492,884 - 0.5
492,886 - -0.7
492,889 - -1.1
492,898 - -0.0
492,907 + 0.0
492,919 - -0.4
492,919 - 0.4
492,947 - -0.4
492,947 + -0.5
492,949 - 2.1
492,954 + -0.9
492,960 - -0.5
492,994 - 0.8
493,025 + 0.6
493,089 + 0.1
493,166 - 0.5