Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4561

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4560: 12928 - Hypothetical Protein, at 463085 to 464279 12928 mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464488 to 466003 12929 mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466499 to 468748 12930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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463,888 + 12928 mRNA_4560 0.67 -0.8
464,053 - 12928 mRNA_4560 0.81 0.8
464,163 + -0.0
464,335 + 0.4
464,335 + -2.9
464,342 + 0.8
464,371 + -0.2
464,393 - 0.7
464,444 + -0.5
464,541 - 0.1
464,547 + 1.5
464,556 - -0.6
464,563 - 1.8
465,113 - 12929 mRNA_4561 0.41 0.7
465,712 - 12929 mRNA_4561 0.81 -1.6
465,742 + 12929 mRNA_4561 0.83 0.5
465,894 - -0.3
465,996 + 0.9
465,996 + 0.1
466,006 - 1.7
466,021 + 0.1
466,157 - 0.2
466,174 + 0.2
466,178 - 0.4
466,183 + -1.0
466,324 - 1.6
466,325 + 0.1
466,332 - 0.5
466,333 + -0.8
466,333 + 0.0
466,473 + -0.5
466,473 + -1.5
466,480 - 1.4
466,490 - -0.2
466,770 + 12930 mRNA_4562 0.12 -0.3
466,783 + 12930 mRNA_4562 0.13 -0.2
466,928 + 12930 mRNA_4562 0.19 -0.9
466,930 - 12930 mRNA_4562 0.19 -1.3
466,932 - 12930 mRNA_4562 0.19 -0.6