Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4553

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442717 to 444581 12920 mRNA_4553: 12921 - SUPERFAMILY--SSF81383, at 445530 to 447635 12921 mRNA_4554: 12922 - K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44, at 447758 to 451562 12922

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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444,561 - -0.8
444,568 + -2.3
444,864 + 0.2
444,999 - -0.6
445,002 - -0.5
445,020 - -0.2
445,029 + 1.1
445,335 + 0.9
445,652 - -0.6
445,755 + 12921 mRNA_4553 0.11 0.3
445,757 - 12921 mRNA_4553 0.11 0.7
445,799 - 12921 mRNA_4553 0.13 1.6
445,913 - 12921 mRNA_4553 0.18 0.1
446,025 + 12921 mRNA_4553 0.24 1.7
446,396 - 12921 mRNA_4553 0.41 0.3
446,578 - 12921 mRNA_4553 0.50 2.0
446,953 + 12921 mRNA_4553 0.68 0.2
446,969 + 12921 mRNA_4553 0.68 -1.5
447,121 + 12921 mRNA_4553 0.76 1.6
447,376 - 12921 mRNA_4553 0.88 2.4
447,401 - 12921 mRNA_4553 0.89 -2.2
447,402 + 12921 mRNA_4553 0.89 -1.6
447,418 + 12921 mRNA_4553 0.90 0.6
447,420 - 12921 mRNA_4553 0.90 0.5
447,420 - 12921 mRNA_4553 0.90 0.2
447,455 - 0.4
447,476 - -0.6
447,541 - 0.7
447,553 + 0.3
447,699 - -0.4
448,004 - -0.5