Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4541

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412485 to 416287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417161 to 419747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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416,246 - 0.3
416,272 - -0.8
416,273 + 0.8
416,284 + 0.1
416,394 - -0.1
416,420 + 1.6
416,428 + -0.3
416,548 - 1.4
416,572 - 1.6
416,733 - -2.2
416,756 - 1.0
416,859 - -0.2
416,868 - -0.8
416,877 + 1.8
416,910 - -1.1
416,914 - 1.0
416,915 + 0.6
416,916 + 0.2
417,561 - 12909 mRNA_4541 0.15 -0.3
417,618 + 12909 mRNA_4541 0.18 0.1
417,795 - 12909 mRNA_4541 0.25 0.3
418,091 + 12909 mRNA_4541 0.36 -0.1
418,356 - 12909 mRNA_4541 0.46 0.8
418,515 + 12909 mRNA_4541 0.52 0.1
418,655 + 12909 mRNA_4541 0.58 -2.9
418,931 - 12909 mRNA_4541 0.68 0.1
420,106 + -0.3
420,146 + 0.5
420,262 - 1.0
420,263 + -1.0
420,263 - -0.1
420,263 + 0.7
420,277 - 0.5
420,299 + 1.5
420,377 + 0.4