Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4526

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381008 to 382487 12893 mRNA_4526: 12894 - K12446 E2.7.1.46 L-arabinokinase, at 382744 to 384550 12894 mRNA_4527: 12895 - SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 384813 to 386229 12895

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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381,808 - 12893 mRNA_4525 0.54 0.7
381,812 + 12893 mRNA_4525 0.54 0.2
382,086 + 12893 mRNA_4525 0.73 0.1
382,112 + 12893 mRNA_4525 0.75 -1.7
382,142 - 12893 mRNA_4525 0.77 1.7
382,244 - 12893 mRNA_4525 0.84 -0.3
382,259 + 12893 mRNA_4525 0.85 -1.4
382,285 - 12893 mRNA_4525 0.86 1.4
382,291 - 12893 mRNA_4525 0.87 0.4
382,291 - 12893 mRNA_4525 0.87 0.6
382,298 + 12893 mRNA_4525 0.87 -0.1
382,400 + 0.5
382,405 + -0.4
382,518 - 1.2
382,676 - 0.0
382,684 + 0.3
382,807 - 1.3
382,828 - 0.2
382,934 + 12894 mRNA_4526 0.11 1.8
382,979 + 12894 mRNA_4526 0.13 1.3
383,104 + 12894 mRNA_4526 0.20 2.2
383,233 - 12894 mRNA_4526 0.27 0.8
383,820 - 12894 mRNA_4526 0.60 0.8
383,858 - 12894 mRNA_4526 0.62 1.8
383,877 + 12894 mRNA_4526 0.63 0.0
384,590 - -0.5
384,608 - 0.2
384,904 - -0.5
385,233 + 12895 mRNA_4527 0.30 -4.5
385,366 + 12895 mRNA_4527 0.39 0.9
385,369 - 12895 mRNA_4527 0.39 -0.3
385,379 + 12895 mRNA_4527 0.40 -0.2