Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4524

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377162 to 379234 12891 mRNA_4524: 12892 - Hypothetical Protein, at 379640 to 380547 12892 mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381008 to 382487 12893

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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378,870 - 12891 mRNA_4523 0.82 0.0
379,009 - 12891 mRNA_4523 0.89 1.7
379,047 + -1.4
379,051 + 0.9
379,071 - -1.6
379,091 + -0.6
379,166 - -0.6
379,182 + 0.9
379,182 - -0.5
379,190 - -0.2
379,191 + -0.9
379,195 - 0.9
379,222 + -0.5
379,323 - 2.1
379,330 + 0.0
379,338 + -0.9
379,338 + -0.1
379,465 - -2.3
379,481 - 1.8
379,506 - -0.3
379,618 - 1.1
379,756 - 12892 mRNA_4524 0.13 0.1
379,764 + 12892 mRNA_4524 0.14 0.1
379,765 + 12892 mRNA_4524 0.14 -1.1
379,771 + 12892 mRNA_4524 0.14 0.5
379,774 - 12892 mRNA_4524 0.15 -0.5
379,932 + 12892 mRNA_4524 0.32 1.8
380,089 + 12892 mRNA_4524 0.49 -0.3
380,187 + 12892 mRNA_4524 0.60 -1.3
380,633 - 0.5
380,733 + 0.2