Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4474

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265412 to 268856 12841 mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268995 to 271231 12842 mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271874 to 274192 12843

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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268,960 - 0.6
269,057 + 0.2
269,062 + -1.1
269,122 + 0.1
269,245 + 12842 mRNA_4474 0.11 2.1
269,318 - 12842 mRNA_4474 0.14 -1.4
269,330 - 12842 mRNA_4474 0.15 -0.1
269,403 + 12842 mRNA_4474 0.18 1.1
269,417 + 12842 mRNA_4474 0.19 0.5
269,420 + 12842 mRNA_4474 0.19 0.7
269,432 + 12842 mRNA_4474 0.20 -1.0
269,554 - 12842 mRNA_4474 0.25 0.9
269,575 - 12842 mRNA_4474 0.26 0.3
269,612 + 12842 mRNA_4474 0.28 1.8
269,675 + 12842 mRNA_4474 0.30 0.5
270,207 + 12842 mRNA_4474 0.54 -0.7
270,324 - 12842 mRNA_4474 0.59 -0.5
270,454 - 12842 mRNA_4474 0.65 -0.2
270,692 - 12842 mRNA_4474 0.76 -0.4
270,745 - 12842 mRNA_4474 0.78 -0.5
270,863 + 12842 mRNA_4474 0.84 0.6
270,865 + 12842 mRNA_4474 0.84 -2.5
270,873 + 12842 mRNA_4474 0.84 0.2
271,092 - -0.7
271,158 + -0.1
271,192 + 1.0
271,316 - -0.1
271,346 + -0.0
271,349 - -0.0
271,364 - -2.6
271,372 + -1.1
271,382 - 0.1
271,407 - 0.6
271,441 + -1.9
271,457 - -0.7
271,473 - 0.1
271,483 + -1.6
271,493 + 0.1
271,514 + 2.7
271,516 + -1.4
271,564 - 0.5
271,569 - 1.4
271,570 + 0.4
271,592 - -1.5
271,598 - -1.4
271,603 - 0.3
271,604 + -0.6
271,618 - 0.4
271,618 - -1.9
271,618 + 0.8
271,624 + 0.9
271,628 + 2.0
271,639 - 1.0
271,755 - -1.0
271,804 + 0.5