Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4456

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226736 to 228552 12823 mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228673 to 230476 12824 mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231158 to 232825 12825

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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227,708 - 12823 mRNA_4455 0.53 0.0
227,801 - 12823 mRNA_4455 0.59 0.5
227,960 - 12823 mRNA_4455 0.67 1.6
228,309 + 12823 mRNA_4455 0.87 0.3
228,428 - -2.5
228,431 - 1.2
228,586 + 1.7
228,589 + 0.1
228,594 - 1.9
228,595 - 0.4
228,598 - 0.1
228,613 + -1.8
228,621 - 1.7
228,621 - 0.6
228,720 + 1.0
228,735 - -0.4
228,740 - -0.5
228,898 - 12824 mRNA_4456 0.12 -1.0
228,914 + 12824 mRNA_4456 0.13 -0.4
228,922 + 12824 mRNA_4456 0.14 -0.9
228,936 - 12824 mRNA_4456 0.15 -0.0
228,974 - 12824 mRNA_4456 0.17 -2.3
229,027 + 12824 mRNA_4456 0.20 0.0
229,028 - 12824 mRNA_4456 0.20 -1.2
229,056 + 12824 mRNA_4456 0.21 -1.0
229,067 - 12824 mRNA_4456 0.22 -0.3
229,070 - 12824 mRNA_4456 0.22 -0.5
229,071 + 12824 mRNA_4456 0.22 -0.2
229,121 + 12824 mRNA_4456 0.25 1.9
229,197 - 12824 mRNA_4456 0.29 -0.2
229,211 - 12824 mRNA_4456 0.30 -0.6
229,228 - 12824 mRNA_4456 0.31 -0.4
229,229 + 12824 mRNA_4456 0.31 2.2
229,235 + 12824 mRNA_4456 0.31 0.5
229,237 - 12824 mRNA_4456 0.31 0.2
229,333 - 12824 mRNA_4456 0.37 0.6
229,335 + 12824 mRNA_4456 0.37 -0.1
229,822 + 12824 mRNA_4456 0.64 0.4
229,944 + 12824 mRNA_4456 0.70 0.0
230,067 - 12824 mRNA_4456 0.77 -1.6
230,217 + 12824 mRNA_4456 0.86 -0.2
230,227 + 12824 mRNA_4456 0.86 1.8
230,485 - 0.1
230,501 + 1.1
230,512 - 0.2
230,533 - -3.1
230,621 + 0.9
230,627 - 0.5
230,742 - -0.7
230,767 - 0.2
230,769 - 0.6
230,769 + 1.5
230,873 + 1.0
230,881 + -0.0
230,881 - -0.0
230,881 + -1.2
230,889 - 0.5
230,897 - -0.3
230,910 + 0.4
230,919 - 0.4
230,920 - 0.4
230,956 - 1.3
230,966 - 0.3
230,966 + -0.4
230,970 - -0.3
230,974 - 1.3
230,982 - -0.0
230,995 - 0.5
231,009 - 0.2
231,012 - 0.6
231,031 + 1.3
231,061 + 0.7
231,275 + -0.2
231,402 + 12825 mRNA_4457 0.15 0.6