Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4436

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175416 to 177921 12803 mRNA_4436: 12804 - Hypothetical Protein, at 178306 to 178939 12804 mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179176 to 181994 12805

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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177,346 - 12803 mRNA_4435 0.77 -0.8
177,376 - 12803 mRNA_4435 0.78 -0.4
177,421 - 12803 mRNA_4435 0.80 0.2
177,436 + 12803 mRNA_4435 0.81 -0.7
177,454 + 12803 mRNA_4435 0.81 0.9
177,684 - -0.1
177,735 + -0.5
177,743 + 0.1
178,129 + 1.0
178,180 - 0.4
178,275 + -1.1
178,278 - -0.2
178,309 - 0.7
178,315 - 0.3
178,320 - 0.5
178,320 - -0.1
178,322 + -0.3
178,324 + 1.0
178,335 + 0.7
178,341 + 0.7
178,347 + 0.1
178,358 - -1.0
178,381 - 12804 mRNA_4436 0.12 -1.3
178,385 - 12804 mRNA_4436 0.12 -0.9
178,488 + 12804 mRNA_4436 0.29 0.6
178,622 - 12804 mRNA_4436 0.50 -0.1
178,627 + 12804 mRNA_4436 0.51 0.1
178,736 + 12804 mRNA_4436 0.68 -0.4
178,820 + 12804 mRNA_4436 0.81 1.3
178,867 + 12804 mRNA_4436 0.88 -0.9
178,884 + 1.2
178,885 - -1.6
178,939 - -1.0
179,029 - -3.6
179,032 - -0.1
179,033 + -2.2
179,039 + -1.1
179,039 + -0.2
179,078 - 2.2
179,226 - -2.3
179,233 + -1.5
179,255 + -0.8
179,707 - 12805 mRNA_4437 0.19 -0.4
179,793 + 12805 mRNA_4437 0.22 -0.7
179,910 + 12805 mRNA_4437 0.26 0.3