Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4427

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156367 to 159071 12794 mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160068 to 161346 12795 mRNA_4428: 12796 - Hypothetical Protein, at 161727 to 164031 12796

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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159,074 - -1.4
159,146 - -0.1
159,230 + -0.5
159,596 + 2.3
159,873 + 1.1
159,873 - -0.3
160,010 + -0.0
160,013 - 0.5
160,025 + -1.0
160,104 - 0.3
160,155 + -0.8
160,295 - 12795 mRNA_4427 0.18 -0.0
160,442 + 12795 mRNA_4427 0.29 0.3
160,858 - 12795 mRNA_4427 0.62 -2.4
160,875 - 12795 mRNA_4427 0.63 0.0
161,025 + 12795 mRNA_4427 0.75 0.1
161,139 - 12795 mRNA_4427 0.84 -0.8
161,146 + 12795 mRNA_4427 0.84 -0.8
161,177 - 12795 mRNA_4427 0.87 -1.9
161,348 - 0.7
161,395 - -1.5
161,396 + 0.1
161,753 - 0.8