Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4422

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144422 to 145671 12789 mRNA_4422: 12790 - BLAST Regulator of nonsense transcripts UPF2 [Grifola frond..., at 145767 to 149805 12790 mRNA_4423: 12791 - K09528 DNAJC8 DnaJ homolog subfamily C member 8, at 150001 to 151135 12791

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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145,813 - 0.0
145,833 + -1.9
146,084 - -0.7
148,137 - 12790 mRNA_4422 0.59 0.8
148,892 + 12790 mRNA_4422 0.77 -0.3
148,953 + 12790 mRNA_4422 0.79 -0.0
148,957 - 12790 mRNA_4422 0.79 -0.6
149,195 + 12790 mRNA_4422 0.85 1.1
149,359 - 12790 mRNA_4422 0.89 -0.7
149,457 + -0.2
149,717 + 0.6
149,832 - 1.2
149,832 - -1.6
149,841 + 0.8
149,841 - 1.0
149,841 - -0.5
149,925 + -0.8
149,931 + 0.8
149,935 - -0.3
149,936 - 1.0