Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4419

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138075 to 139542 12786 mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139865 to 142182 12787 mRNA_4420: 12788 - Hypothetical Protein, at 142782 to 144296 12788

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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139,579 - 2.1
139,611 + 0.3
139,626 + -0.9
139,751 + -0.7
139,756 + 1.0
139,795 + 0.1
139,896 - 0.5
139,897 - 1.0
139,935 - -0.1
140,060 - -1.2
140,102 + 12787 mRNA_4419 0.10 1.6
140,110 - 12787 mRNA_4419 0.11 -0.9
140,355 + 12787 mRNA_4419 0.21 0.9
140,509 - 12787 mRNA_4419 0.28 1.7
142,307 + 0.2
142,356 - -1.4
142,405 - -0.1
142,412 + 0.2
142,487 + -0.3
142,562 + -0.2
142,622 + -0.4
142,628 - 0.4
142,727 - -0.4
143,182 + 12788 mRNA_4420 0.26 -1.3
143,182 + 12788 mRNA_4420 0.26 0.2