Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4416

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131419 to 134157 12783 mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134508 to 136011 12784 mRNA_4417: 12785 - Hypothetical Protein, at 136437 to 137903 12785

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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133,511 + 12783 mRNA_4415 0.76 -1.2
133,552 + 12783 mRNA_4415 0.78 -0.9
133,620 - 12783 mRNA_4415 0.80 -0.9
133,671 + 12783 mRNA_4415 0.82 -1.2
133,700 + 12783 mRNA_4415 0.83 0.3
133,701 + 12783 mRNA_4415 0.83 1.9
133,707 - 12783 mRNA_4415 0.84 -0.4
134,039 + -0.3
134,560 + 0.5
134,596 + -0.3
134,625 - -1.7
134,728 + 12784 mRNA_4416 0.15 -0.2
134,875 + 12784 mRNA_4416 0.24 -0.9
135,073 - 12784 mRNA_4416 0.38 -0.5
135,143 + 12784 mRNA_4416 0.42 -1.4
135,149 + 12784 mRNA_4416 0.43 -0.6
135,213 + 12784 mRNA_4416 0.47 0.6
135,255 - 12784 mRNA_4416 0.50 -2.6
135,336 - 12784 mRNA_4416 0.55 -1.4
135,341 - 12784 mRNA_4416 0.55 0.4
135,351 - 12784 mRNA_4416 0.56 1.5
135,419 - 12784 mRNA_4416 0.61 -2.1
135,427 + 12784 mRNA_4416 0.61 1.9
135,456 + 12784 mRNA_4416 0.63 1.0
135,457 - 12784 mRNA_4416 0.63 -2.1
135,465 + 12784 mRNA_4416 0.64 -0.6
135,488 - 12784 mRNA_4416 0.65 -1.0
135,499 - 12784 mRNA_4416 0.66 -1.1
135,587 + 12784 mRNA_4416 0.72 -0.8
135,603 - 12784 mRNA_4416 0.73 0.8
135,669 + 12784 mRNA_4416 0.77 -0.1
135,776 - 12784 mRNA_4416 0.84 -1.1
135,847 - 12784 mRNA_4416 0.89 -0.1
135,903 + 1.3
135,966 + 1.3
136,058 + -0.1
136,176 - 0.4
136,183 - 2.1
136,207 - 0.2
136,207 + 2.0
136,233 + 1.2
136,253 + -1.0
136,394 - -1.9
136,528 + -1.5
136,546 - 1.2
136,694 + 12785 mRNA_4417 0.18 -0.5
136,779 + 12785 mRNA_4417 0.23 -0.3
136,782 - 12785 mRNA_4417 0.24 -0.1
136,782 + 12785 mRNA_4417 0.24 -0.8
136,850 + 12785 mRNA_4417 0.28 -1.0