Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4404

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4403: 12771 - Hypothetical Protein, at 99143 to 102687 12771 mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103053 to 104397 12772 mRNA_4405: 12773 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 105098 to 106781 12773

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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102,101 + 12771 mRNA_4403 0.83 1.0
102,104 + 12771 mRNA_4403 0.84 -0.5
102,122 - 12771 mRNA_4403 0.84 0.5
102,276 - 12771 mRNA_4403 0.88 1.1
102,340 + 0.4
102,417 + 0.1
102,422 + -0.5
102,580 + -0.8
102,706 + 0.1
102,996 + -0.5
103,171 + -0.1
103,176 - -1.0
103,649 + 12772 mRNA_4404 0.44 -0.6
103,649 + 12772 mRNA_4404 0.44 -0.3
104,186 - 12772 mRNA_4404 0.84 0.6
104,467 + -0.4
104,484 - 0.1
104,505 - 0.1
104,524 + 0.1
104,529 - 0.4
104,536 - -0.4
104,639 - 0.1
104,641 - -0.7
104,641 - -0.4
104,661 - -0.0
104,662 - -0.7
104,756 - 0.0
104,937 - 0.7
104,978 + 0.4
105,098 - -0.7
105,112 + 1.2
105,295 + 12773 mRNA_4405 0.12 1.3
105,395 - 12773 mRNA_4405 0.18 0.4