Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4370

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29253 to 29815 12737 mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30221 to 32027 12738 mRNA_4371: 12739 - K10877 RAD54B DNA repair and recombination protein RAD54B, at 32512 to 35317 12739

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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29,668 - 12737 mRNA_4369 0.74 0.6
29,839 + 0.3
30,499 - 12738 mRNA_4370 0.15 -0.4
30,508 - 12738 mRNA_4370 0.16 -0.9
31,175 - 12738 mRNA_4370 0.53 1.4
31,453 - 12738 mRNA_4370 0.68 2.8
31,675 - 12738 mRNA_4370 0.80 -0.0
31,682 + 12738 mRNA_4370 0.81 -1.0
31,705 - 12738 mRNA_4370 0.82 -1.2
31,810 - 12738 mRNA_4370 0.88 -0.7
31,920 + 2.0
31,953 - 0.3
32,084 + 1.6
32,104 - 0.8
32,105 + -0.4
32,124 - -0.5
32,126 + -0.1
32,130 + -0.2
32,130 + 0.4
32,132 - -1.1
32,133 - -1.0
32,134 - 0.6
32,157 - -0.2
32,198 + 1.3
32,251 - 1.2
32,257 - -0.8
32,260 - 0.4
32,260 - -0.8
32,261 - -0.3
32,263 - -0.9
32,287 - 0.2
32,311 + 0.4
32,318 + -0.8
32,328 + -1.3
32,437 - -0.6
32,455 - 0.5
32,524 - 0.5
32,639 - -0.3
32,662 + -0.2
32,664 + 0.9
32,696 - -3.2
32,766 - -0.0
32,815 + 12739 mRNA_4371 0.11 1.5
32,993 - 12739 mRNA_4371 0.17 -2.0