Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4334

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4333: 12701 - Hypothetical Protein, at 1930244 to 1931329 12701 mRNA_4334: 12702 - K10534 NR nitrate reductase (NAD(P)H), at 1931652 to 1934999 12702 mRNA_4335: 12703 - K12620 LSM1 U6 snRNA-associated Sm-like protein LSm1, at 1935202 to 1935968 12703

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,930,966 - 12701 mRNA_4333 0.66 0.3
1,930,972 - 12701 mRNA_4333 0.67 1.1
1,930,976 + 12701 mRNA_4333 0.67 -0.8
1,930,980 + 12701 mRNA_4333 0.68 0.1
1,930,989 + 12701 mRNA_4333 0.69 0.7
1,931,115 - 12701 mRNA_4333 0.80 -0.5
1,931,122 - 12701 mRNA_4333 0.81 0.1
1,931,134 - 12701 mRNA_4333 0.82 0.5
1,931,269 + -0.9
1,931,418 - 0.2
1,931,421 - 0.6
1,931,425 + -1.1
1,931,439 - 1.9
1,931,443 + 0.1
1,931,563 - -0.2
1,931,586 + -0.1
1,931,587 + -1.7
1,931,704 - -1.7
1,931,714 + 0.2
1,931,741 + 1.0
1,931,863 + 0.9
1,932,028 - 12702 mRNA_4334 0.11 1.3
1,932,032 - 12702 mRNA_4334 0.11 0.5
1,932,180 + 12702 mRNA_4334 0.16 1.4
1,932,314 + 12702 mRNA_4334 0.20 1.3
1,932,442 + 12702 mRNA_4334 0.24 0.8
1,932,604 + 12702 mRNA_4334 0.28 -1.0
1,932,873 + 12702 mRNA_4334 0.36 1.3
1,932,934 + 12702 mRNA_4334 0.38 2.2
1,933,053 - 12702 mRNA_4334 0.42 0.4
1,933,055 - 12702 mRNA_4334 0.42 -3.7
1,933,057 + 12702 mRNA_4334 0.42 -2.4
1,933,325 - 12702 mRNA_4334 0.50 -0.5
1,933,487 - 12702 mRNA_4334 0.55 0.7
1,933,507 + 12702 mRNA_4334 0.55 0.5
1,933,633 - 12702 mRNA_4334 0.59 1.2
1,933,753 - 12702 mRNA_4334 0.63 -0.4
1,933,783 + 12702 mRNA_4334 0.64 -0.0
1,933,798 + 12702 mRNA_4334 0.64 0.4
1,933,807 + 12702 mRNA_4334 0.64 0.4
1,933,808 + 12702 mRNA_4334 0.64 0.2
1,933,822 + 12702 mRNA_4334 0.65 0.0
1,933,914 + 12702 mRNA_4334 0.68 -0.7
1,933,954 + 12702 mRNA_4334 0.69 1.3
1,933,965 - 12702 mRNA_4334 0.69 2.7
1,934,217 - 12702 mRNA_4334 0.77 0.2
1,934,647 + 12702 mRNA_4334 0.89 2.2
1,934,651 - 12702 mRNA_4334 0.90 1.2
1,934,810 + -0.3
1,934,934 + -0.3
1,934,966 + -2.6
1,934,977 + -0.3
1,935,083 + 2.4
1,935,094 - 1.4
1,935,105 - -0.0
1,935,110 + 0.2
1,935,114 - 0.4
1,935,134 + 1.4
1,935,969 + -1.7
1,935,981 - -0.2
1,935,992 - -0.8