Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4275

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1771477 to 1773946 12642 mRNA_4275: 12643 - HMMPfam-RhoGEF domain-PF00621,ProSiteProfiles-Dbl homology (DH) domain profile.-PS50010,SUPERFAMILY--SSF48065, at 1774189 to 1777372 12643 mRNA_4276: 12644 - Hypothetical Protein, at 1777738 to 1779130 12644

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,773,449 + 12642 mRNA_4274 0.80 -0.0
1,773,451 - 12642 mRNA_4274 0.80 -0.6
1,773,452 + 12642 mRNA_4274 0.80 2.0
1,773,597 - 12642 mRNA_4274 0.86 -0.7
1,773,600 + 12642 mRNA_4274 0.86 0.7
1,773,604 + 12642 mRNA_4274 0.86 -2.1
1,773,616 - 12642 mRNA_4274 0.87 -0.2
1,773,619 + 12642 mRNA_4274 0.87 0.6
1,773,640 + 12642 mRNA_4274 0.88 -0.4
1,773,642 + 12642 mRNA_4274 0.88 -2.2
1,773,661 + 12642 mRNA_4274 0.88 -0.6
1,773,936 + -0.0
1,774,597 - 12643 mRNA_4275 0.13 1.7
1,774,682 - 12643 mRNA_4275 0.15 2.2
1,775,075 + 12643 mRNA_4275 0.28 -0.7
1,775,215 + 12643 mRNA_4275 0.32 -0.5
1,775,397 - 12643 mRNA_4275 0.38 0.6
1,775,414 + 12643 mRNA_4275 0.38 -0.6
1,775,689 + 12643 mRNA_4275 0.47 0.2
1,775,695 + 12643 mRNA_4275 0.47 0.1
1,775,779 - 12643 mRNA_4275 0.50 0.2
1,775,952 + 12643 mRNA_4275 0.55 -0.4
1,776,127 - 12643 mRNA_4275 0.61 0.5
1,776,162 - 12643 mRNA_4275 0.62 0.8
1,776,219 - 12643 mRNA_4275 0.64 -0.7
1,776,240 - 12643 mRNA_4275 0.64 -1.5
1,776,432 - 12643 mRNA_4275 0.70 0.6
1,776,535 - 12643 mRNA_4275 0.74 -2.5
1,776,721 + 12643 mRNA_4275 0.80 0.7
1,776,740 - 12643 mRNA_4275 0.80 0.1
1,776,886 - 12643 mRNA_4275 0.85 -0.8
1,776,897 + 12643 mRNA_4275 0.85 0.9
1,776,978 - 12643 mRNA_4275 0.88 2.3
1,776,981 + 12643 mRNA_4275 0.88 -1.2
1,777,133 + 0.8
1,777,270 - 0.0
1,777,290 + 0.3
1,777,293 - 1.1
1,777,298 + 0.2
1,777,393 + -2.2
1,777,427 + 1.2
1,777,454 + -0.2
1,777,463 + 0.5
1,777,871 - 0.6
1,777,892 + 12644 mRNA_4276 0.11 -1.0
1,777,895 - 12644 mRNA_4276 0.11 -0.4
1,777,898 + 12644 mRNA_4276 0.11 0.0
1,778,171 + 12644 mRNA_4276 0.31 1.1
1,778,335 + 12644 mRNA_4276 0.43 0.3
1,778,370 - 12644 mRNA_4276 0.45 0.1