Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4274

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1767656 to 1771232 12641 mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1771477 to 1773946 12642 mRNA_4275: 12643 - HMMPfam-RhoGEF domain-PF00621,ProSiteProfiles-Dbl homology (DH) domain profile.-PS50010,SUPERFAMILY--SSF48065, at 1774189 to 1777372 12643

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,770,485 - 12641 mRNA_4273 0.79 -1.0
1,770,485 + 12641 mRNA_4273 0.79 -1.3
1,770,678 - 12641 mRNA_4273 0.84 0.9
1,770,681 - 12641 mRNA_4273 0.85 -0.4
1,770,686 + 12641 mRNA_4273 0.85 -1.0
1,770,942 - 1.4
1,771,054 - 0.3
1,771,093 + 0.4
1,771,093 + 0.9
1,771,108 - 0.4
1,771,117 - 1.7
1,771,210 - 1.5
1,771,232 - -0.5
1,771,234 + 0.3
1,771,242 - -2.4
1,771,245 + 0.5
1,771,259 + -0.5
1,771,382 + -1.6
1,771,404 - 0.8
1,771,413 - -1.6
1,771,427 + -0.2
1,771,449 + 0.1
1,771,557 - 0.4
1,771,578 - 0.3
1,771,699 - -0.1
1,771,702 + 1.1
1,771,706 + 0.3
1,771,715 + -3.0
1,771,880 + 12642 mRNA_4274 0.16 0.3
1,772,023 - 12642 mRNA_4274 0.22 0.3
1,772,302 - 12642 mRNA_4274 0.33 -0.1
1,772,302 + 12642 mRNA_4274 0.33 -0.5
1,772,304 - 12642 mRNA_4274 0.33 1.4
1,772,336 + 12642 mRNA_4274 0.35 2.4
1,772,454 - 12642 mRNA_4274 0.40 0.1
1,772,492 - 12642 mRNA_4274 0.41 -1.0
1,772,593 + 12642 mRNA_4274 0.45 -0.9
1,772,900 - 12642 mRNA_4274 0.58 -2.6
1,773,449 + 12642 mRNA_4274 0.80 -0.0
1,773,451 - 12642 mRNA_4274 0.80 -0.6
1,773,452 + 12642 mRNA_4274 0.80 2.0
1,773,597 - 12642 mRNA_4274 0.86 -0.7
1,773,600 + 12642 mRNA_4274 0.86 0.7
1,773,604 + 12642 mRNA_4274 0.86 -2.1
1,773,616 - 12642 mRNA_4274 0.87 -0.2
1,773,619 + 12642 mRNA_4274 0.87 0.6
1,773,640 + 12642 mRNA_4274 0.88 -0.4
1,773,642 + 12642 mRNA_4274 0.88 -2.2
1,773,661 + 12642 mRNA_4274 0.88 -0.6
1,773,936 + -0.0
1,774,597 - 12643 mRNA_4275 0.13 1.7
1,774,682 - 12643 mRNA_4275 0.15 2.2