Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4262

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4261: 12629 - HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811, at 1737818 to 1738734 12629 mRNA_4262: 12630 - KOG2688 Transcription-associated recombination protein - Thp1p, at 1738900 to 1741067 12630 mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1741232 to 1743677 12631

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,738,088 - 12629 mRNA_4261 0.29 -2.0
1,738,411 + 12629 mRNA_4261 0.65 1.0
1,738,584 + 12629 mRNA_4261 0.84 1.5
1,738,666 - 2.6
1,738,686 + -0.1
1,738,720 - -0.6
1,738,805 + 0.1
1,738,821 - -1.7
1,738,828 + 0.3
1,738,994 - -1.2
1,738,995 + -1.0
1,738,995 - 0.1
1,739,241 + 12630 mRNA_4262 0.16 -1.5
1,739,830 - 12630 mRNA_4262 0.43 -0.7
1,740,131 + 12630 mRNA_4262 0.57 -0.8
1,740,822 - 12630 mRNA_4262 0.89 0.7