Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4235

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1679173 to 1681802 12602 mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1682242 to 1685142 12603 mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1685363 to 1686839 12604

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,681,669 + 1.2
1,681,695 + -0.2
1,681,802 - 1.6
1,681,803 + -0.4
1,681,803 - -0.6
1,681,813 + -0.1
1,681,903 + 0.1
1,681,937 - 1.0
1,681,941 - -0.6
1,681,959 - -0.2
1,682,269 - 1.1
1,682,274 + -0.9
1,682,278 - -1.5
1,682,280 + -1.3
1,682,391 - -1.0
1,682,427 + 0.4
1,682,562 + 12603 mRNA_4235 0.11 0.6
1,682,637 + 12603 mRNA_4235 0.14 0.5
1,682,694 - 12603 mRNA_4235 0.16 1.2
1,682,731 + 12603 mRNA_4235 0.17 -0.7
1,683,012 - 12603 mRNA_4235 0.27 -1.5
1,683,149 - 12603 mRNA_4235 0.31 0.7
1,683,272 + 12603 mRNA_4235 0.36 -1.2
1,683,276 + 12603 mRNA_4235 0.36 -0.4
1,683,377 + 12603 mRNA_4235 0.39 0.9
1,683,414 - 12603 mRNA_4235 0.40 0.3
1,683,416 + 12603 mRNA_4235 0.40 -0.0
1,683,460 - 12603 mRNA_4235 0.42 -2.8
1,683,570 - 12603 mRNA_4235 0.46 -0.2
1,683,659 - 12603 mRNA_4235 0.49 -0.5
1,683,701 - 12603 mRNA_4235 0.50 0.1
1,684,054 - 12603 mRNA_4235 0.62 0.2
1,684,128 - 12603 mRNA_4235 0.65 0.2
1,684,168 + 12603 mRNA_4235 0.66 2.1
1,684,284 + 12603 mRNA_4235 0.70 -1.5
1,684,435 - 12603 mRNA_4235 0.76 -1.8
1,684,570 - 12603 mRNA_4235 0.80 1.6
1,684,686 - 12603 mRNA_4235 0.84 1.6
1,684,694 + 12603 mRNA_4235 0.85 -0.6
1,684,920 - -2.5
1,684,997 - 0.4
1,685,237 - -0.5
1,685,238 + -0.5
1,685,460 - -0.5
1,685,478 + -0.9
1,685,482 + -0.3
1,685,610 - 12604 mRNA_4236 0.17 0.1
1,685,611 - 12604 mRNA_4236 0.17 -1.5