Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4175

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4174: 12542 - KOG4305 RhoGEF GTPase, at 1535765 to 1540719 12542 mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1541206 to 1541936 12543 mRNA_4176: 12544 - KOG4093 Uncharacterized conserved protein, at 1542041 to 1542823 12544

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,540,338 + -1.0
1,540,481 - 1.4
1,540,513 - -0.9
1,540,629 - 1.0
1,540,648 + -1.6
1,540,689 + 0.1
1,540,783 + 0.3
1,540,785 + -2.2
1,540,793 - 1.4
1,540,794 - 0.5
1,540,795 - -0.9
1,540,798 + 0.3
1,540,824 + 1.4
1,540,827 + 0.1
1,540,934 - -3.4
1,540,947 - -1.3
1,540,953 + -1.4
1,540,964 - -1.6
1,540,973 + -1.0
1,541,071 + -0.5
1,541,250 + -3.3
1,541,393 - 12543 mRNA_4175 0.26 -1.4
1,541,399 + 12543 mRNA_4175 0.26 -3.1
1,541,538 - 12543 mRNA_4175 0.45 -2.0
1,541,575 + 12543 mRNA_4175 0.50 -3.9
1,541,661 + 12543 mRNA_4175 0.62 -1.5
1,541,662 + 12543 mRNA_4175 0.62 -2.4
1,541,694 - 12543 mRNA_4175 0.67 -2.3
1,541,704 - 12543 mRNA_4175 0.68 -3.2
1,541,978 - 0.1