Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4120

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4120: 12488 - Hypothetical Protein, at 1398627 to 1399035 12488 mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1399216 to 1400320 12489

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,397,816 + 0.5
1,397,957 - 0.0
1,398,073 + -2.8
1,398,360 + 0.2
1,398,360 + -0.4
1,398,362 - -0.3
1,398,516 + 0.3
1,398,536 + -2.4
1,398,536 + -0.4
1,398,537 + -0.3
1,398,539 + 0.9
1,398,560 + -0.3
1,398,565 + 0.4
1,398,650 + 0.4
1,398,668 + 12488 mRNA_4120 0.10 -1.3
1,398,684 + 12488 mRNA_4120 0.14 0.6
1,398,686 + 12488 mRNA_4120 0.14 0.7
1,398,686 + 12488 mRNA_4120 0.14 -0.9
1,398,691 - 12488 mRNA_4120 0.16 -1.1
1,398,692 - 12488 mRNA_4120 0.16 0.4
1,398,694 + 12488 mRNA_4120 0.16 -0.1
1,398,705 + 12488 mRNA_4120 0.19 0.6
1,398,714 + 12488 mRNA_4120 0.21 0.8
1,398,754 - 12488 mRNA_4120 0.31 0.4
1,398,840 + 12488 mRNA_4120 0.52 0.2
1,398,854 - 12488 mRNA_4120 0.56 -0.5
1,398,855 + 12488 mRNA_4120 0.56 0.1
1,398,855 + 12488 mRNA_4120 0.56 2.3
1,398,855 - 12488 mRNA_4120 0.56 1.1
1,398,856 - 12488 mRNA_4120 0.56 0.5
1,398,857 + 12488 mRNA_4120 0.56 0.0
1,398,857 + 12488 mRNA_4120 0.56 0.0
1,398,861 - 12488 mRNA_4120 0.57 1.9
1,398,861 - 12488 mRNA_4120 0.57 -3.0
1,398,861 + 12488 mRNA_4120 0.57 0.9
1,398,866 - 12488 mRNA_4120 0.58 0.1
1,398,874 + 12488 mRNA_4120 0.60 1.2
1,398,875 + 12488 mRNA_4120 0.61 0.5
1,398,881 + 12488 mRNA_4120 0.62 1.7
1,398,882 + 12488 mRNA_4120 0.62 -0.5
1,398,888 + 12488 mRNA_4120 0.64 1.9
1,398,901 - 12488 mRNA_4120 0.67 -0.2
1,399,007 - -1.5
1,399,007 + -1.8
1,399,015 - 0.2
1,399,024 - 0.2
1,399,029 - 1.4
1,399,031 - 0.3
1,399,056 - -0.8
1,399,057 - -0.4
1,399,134 + 0.5
1,399,135 + 0.6
1,399,140 - 0.5
1,399,147 + -0.3
1,399,325 - 1.4
1,399,444 - 12489 mRNA_4121 0.21 0.4
1,399,472 + 12489 mRNA_4121 0.23 0.4
1,399,475 + 12489 mRNA_4121 0.23 0.6
1,399,483 - 12489 mRNA_4121 0.24 0.7
1,399,751 - 12489 mRNA_4121 0.48 0.5
1,399,762 + 12489 mRNA_4121 0.49 2.9