Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4066

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4065: 12433 - KOG1198 Zinc-binding oxidoreductase, at 1270736 to 1272325 12433 mRNA_4066: 12434 - K03426 E3.6.1.22, NUDT12, nudC NAD+ diphosphatase, at 1273272 to 1275258 12434 mRNA_4067: 12435 - KOG0324 Uncharacterized conserved protein, at 1275390 to 1276654 12435

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,272,566 - 1.3
1,272,861 - 1.1
1,272,867 + 0.4
1,272,885 - -1.5
1,272,890 + 0.6
1,272,892 - -1.3
1,272,903 + -0.2
1,272,906 - -0.3
1,272,940 + -0.2
1,272,998 + -1.6
1,273,591 - 12434 mRNA_4066 0.16 0.6
1,273,613 + 12434 mRNA_4066 0.17 -1.9
1,273,879 - 12434 mRNA_4066 0.31 -0.5
1,274,770 + 12434 mRNA_4066 0.75 -1.2
1,274,920 - 12434 mRNA_4066 0.83 -0.6
1,275,048 - 12434 mRNA_4066 0.89 0.4
1,275,187 + 0.1
1,275,203 - 0.1
1,275,212 - -3.0
1,275,213 + 0.9
1,275,361 + 0.7
1,275,364 + 2.9
1,275,372 + 2.6
1,275,889 - 12435 mRNA_4067 0.39 1.1
1,275,927 - 12435 mRNA_4067 0.42 0.1
1,275,928 - 12435 mRNA_4067 0.43 -1.6
1,275,959 + 12435 mRNA_4067 0.45 2.5
1,276,107 + 12435 mRNA_4067 0.57 0.1