Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4008

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1133931 to 1136432 12375 mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1136733 to 1139810 12376 mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1140211 to 1141922 12377

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,135,749 - 12375 mRNA_4007 0.73 0.0
1,136,062 - 12375 mRNA_4007 0.85 -0.0
1,136,175 + 12375 mRNA_4007 0.90 0.5
1,136,180 - 12375 mRNA_4007 0.90 0.9
1,136,490 - 0.5
1,136,493 - 0.3
1,136,497 - -0.2
1,136,498 - 0.4
1,136,530 + -2.2
1,136,531 + -0.3
1,137,070 + 12376 mRNA_4008 0.11 -0.7
1,137,503 + 12376 mRNA_4008 0.25 -1.0
1,137,505 - 12376 mRNA_4008 0.25 0.2
1,137,514 + 12376 mRNA_4008 0.25 0.1
1,137,661 + 12376 mRNA_4008 0.30 -0.2
1,137,703 + 12376 mRNA_4008 0.32 -0.2
1,138,255 - 12376 mRNA_4008 0.49 -0.1
1,138,272 + 12376 mRNA_4008 0.50 0.1
1,138,423 + 12376 mRNA_4008 0.55 -0.4
1,138,710 + 12376 mRNA_4008 0.64 0.7
1,139,002 + 12376 mRNA_4008 0.74 -0.5
1,139,280 - 12376 mRNA_4008 0.83 0.1
1,139,445 - 12376 mRNA_4008 0.88 -2.0
1,139,565 + -1.3
1,139,575 + 0.8
1,139,602 - -1.1
1,139,715 - 0.0
1,139,739 - -0.3
1,139,833 - -1.4
1,139,836 + -0.4
1,139,841 - 0.5
1,139,865 + 0.0
1,139,876 - -0.5
1,139,880 + 1.7
1,139,898 - 2.1
1,139,908 - 1.7
1,139,917 + 0.6
1,139,930 + 1.7
1,139,944 - 1.1
1,139,947 - 0.9
1,139,981 - -1.1
1,139,997 + 1.5
1,140,001 - -0.7
1,140,006 + 0.5
1,140,007 + 0.3
1,140,008 - -0.3
1,140,013 - -1.7
1,140,025 + -0.7
1,140,033 + -0.5
1,140,039 + -0.3
1,140,061 + 1.4
1,140,074 - -0.2
1,140,114 - 0.2
1,140,118 - 0.1
1,140,119 + 0.2
1,140,119 + 0.1
1,140,129 + -2.9
1,140,130 + -0.4
1,140,204 - -1.0
1,140,205 - 0.9
1,140,210 + -0.9
1,140,363 + 0.8