Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4004

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4003: 12371 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 1123880 to 1126136 12371 mRNA_4004: 12372 - KOG1341 Na+/K+ transporter, at 1126968 to 1131164 12372 mRNA_4005: 12373 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1131746 to 1132749 12373

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,126,160 + -0.8
1,126,168 + -0.6
1,126,169 - -0.2
1,126,327 + -0.6
1,126,531 + 1.5
1,126,615 + 0.4
1,126,624 - 0.6
1,126,624 + 0.7
1,126,644 + 0.0
1,126,645 + 1.0
1,126,652 + 0.8
1,126,774 - 0.4
1,126,776 + -0.9
1,126,787 - -0.7
1,126,789 - -1.1
1,126,798 + 0.1
1,126,938 - -0.2
1,126,944 + -0.2
1,127,004 + -3.8
1,127,105 - -2.4
1,127,223 - -3.4
1,127,762 - 12372 mRNA_4004 0.19 -1.7
1,128,693 - 12372 mRNA_4004 0.41 -1.0
1,129,015 + 12372 mRNA_4004 0.49 -2.6
1,129,263 - 12372 mRNA_4004 0.55 -3.2
1,129,265 + 12372 mRNA_4004 0.55 -2.2
1,129,271 + 12372 mRNA_4004 0.55 -2.6
1,130,309 - 12372 mRNA_4004 0.80 -1.3
1,130,326 + 12372 mRNA_4004 0.80 -2.3
1,131,095 + -1.3
1,131,352 - 0.5
1,131,928 + 12373 mRNA_4005 0.18 0.6