Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4003

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4002: 12370 - KOG4089 Predicted mitochondrial ribosomal protein L23, at 1122500 to 1123489 12370 mRNA_4003: 12371 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 1123880 to 1126136 12371 mRNA_4004: 12372 - KOG1341 Na+/K+ transporter, at 1126968 to 1131164 12372

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,123,499 - -0.9
1,123,520 - -0.3
1,123,525 + 0.5
1,123,533 + 0.3
1,123,612 - -1.3
1,123,642 - 0.2
1,123,643 + 0.6
1,123,646 - -1.2
1,123,649 + 0.7
1,123,650 - -0.1
1,123,657 + 0.5
1,123,658 - 0.6
1,123,662 + 0.5
1,123,664 - 0.3
1,123,665 - 0.5
1,123,672 + 1.5
1,123,675 - -0.1
1,123,681 + 1.0
1,123,685 + 1.1
1,123,704 + 0.8
1,123,706 - -1.3
1,123,734 - 1.4
1,123,850 + -0.2
1,123,883 - -0.2
1,123,892 - 0.8
1,123,903 + 2.8
1,123,905 - 1.6
1,124,011 + -0.8
1,124,092 + -2.2
1,124,330 - 12371 mRNA_4003 0.20 0.1
1,124,433 + 12371 mRNA_4003 0.25 0.5
1,124,483 - 12371 mRNA_4003 0.27 0.3
1,124,594 - 12371 mRNA_4003 0.32 1.2
1,124,738 + 12371 mRNA_4003 0.38 1.2
1,125,035 - 12371 mRNA_4003 0.51 1.0
1,125,190 + 12371 mRNA_4003 0.58 0.7
1,125,303 + 12371 mRNA_4003 0.63 0.6
1,125,320 + 12371 mRNA_4003 0.64 -0.0
1,125,919 - 0.9
1,126,160 + -0.8
1,126,168 + -0.6
1,126,169 - -0.2
1,126,327 + -0.6
1,126,531 + 1.5
1,126,615 + 0.4
1,126,624 - 0.6
1,126,624 + 0.7
1,126,644 + 0.0
1,126,645 + 1.0
1,126,652 + 0.8
1,126,774 - 0.4
1,126,776 + -0.9
1,126,787 - -0.7
1,126,789 - -1.1
1,126,798 + 0.1
1,126,938 - -0.2
1,126,944 + -0.2
1,127,004 + -3.8
1,127,105 - -2.4