Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3992

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1089725 to 1094754 12359 mRNA_3992: 12360 - KOG0627 Heat shock transcription factor, at 1095676 to 1096761 12360

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,094,753 - -1.7
1,094,778 - -1.3
1,094,782 + 0.8
1,094,786 + -1.7
1,094,791 - 0.3
1,094,799 - 0.5
1,094,807 - -0.1
1,094,812 - -0.2
1,094,813 + 0.9
1,094,815 - -0.0
1,094,815 - -0.6
1,094,815 - 0.2
1,094,820 - -0.2
1,094,822 - 1.9
1,094,823 - 1.0
1,094,824 - -0.1
1,094,826 - -0.0
1,094,831 + -0.7
1,094,841 + -0.4
1,094,849 + -0.0
1,094,851 - -1.7
1,094,861 - 0.3
1,094,862 - -0.3
1,094,895 - 0.3
1,094,937 + 0.8
1,095,030 - -0.2
1,095,032 + -1.4
1,095,041 + 1.3
1,095,043 + 0.5
1,095,044 - -0.6
1,095,050 - -2.5
1,095,051 + -0.1
1,095,058 + -0.2
1,095,080 - -0.2
1,095,083 + 2.9
1,095,083 + -0.3
1,095,200 - 1.0
1,095,202 + 0.3
1,095,203 + 1.6
1,095,211 - 0.8
1,095,221 + -0.4
1,095,222 + -0.7
1,095,238 + -0.1
1,095,240 + 2.6
1,095,251 - -0.0
1,095,271 + 0.8
1,095,294 - 1.1
1,095,309 - -0.3
1,095,315 + -2.0
1,095,317 + 0.5
1,095,326 - 2.3
1,095,333 - 0.6
1,095,337 - 0.0
1,095,343 - 1.0
1,095,343 - 1.5
1,095,347 - 1.5
1,095,349 - -0.2
1,095,367 + 0.3
1,095,464 + 1.1
1,095,480 - 1.8
1,095,480 + 0.1
1,095,482 - 1.3
1,095,485 + 0.1
1,095,485 + -1.5
1,095,508 + -1.2
1,095,509 - 0.8
1,095,512 - 1.8
1,095,532 + -0.8
1,095,614 + -0.1
1,095,622 - 0.7
1,095,628 - -0.2
1,095,631 - 0.8
1,095,632 - -0.1
1,095,632 - -0.2
1,095,652 - 0.9
1,095,659 + 1.0
1,095,660 - 1.8
1,095,667 + 2.1
1,095,820 - 12360 mRNA_3992 0.13 0.4
1,095,950 + 12360 mRNA_3992 0.25 0.6
1,095,950 - 12360 mRNA_3992 0.25 0.1
1,095,966 - 12360 mRNA_3992 0.27 -0.5
1,095,974 - 12360 mRNA_3992 0.27 -0.8
1,096,120 - 12360 mRNA_3992 0.41 -1.1
1,096,127 + 12360 mRNA_3992 0.42 1.8
1,096,421 - 12360 mRNA_3992 0.69 1.4
1,096,569 - 12360 mRNA_3992 0.82 0.6
1,096,690 + -0.6
1,096,835 - -0.6
1,097,000 - -1.1
1,097,150 - 0.1
1,097,238 - 0.7
1,097,291 + 0.2
1,097,440 + 0.5
1,097,443 + 0.6
1,097,449 + 0.7
1,097,452 - 0.4
1,097,453 - 0.6
1,097,453 + -0.5
1,097,461 + 1.2
1,097,467 - 0.7
1,097,468 - -0.8
1,097,469 + 0.1
1,097,470 - -0.1
1,097,472 - 1.7
1,097,488 - 0.5
1,097,489 + -0.4
1,097,491 + 0.8
1,097,496 - -0.1
1,097,503 - 0.6
1,097,505 + -0.2
1,097,516 - 0.5
1,097,533 - 0.7
1,097,541 + 0.3
1,097,573 - 0.3
1,097,583 + 0.1
1,097,601 + -0.2
1,097,603 + 1.2
1,097,607 + 1.6
1,097,613 + 0.1
1,097,622 - 0.1
1,097,722 + 0.9
1,097,729 - -0.2
1,097,761 - -0.2