Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3969

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1022985 to 1024769 12336 mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1025605 to 1026362 12337 mRNA_3970: 12338 - Hypothetical Protein, at 1026550 to 1027191 12338

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,024,614 - 0.8
1,024,615 + 0.3
1,024,789 + -1.7
1,025,035 - 1.5
1,025,048 + 0.5
1,025,051 + -0.4
1,025,065 - 0.2
1,025,217 + -0.5
1,025,239 - 1.1
1,025,339 - -0.1
1,025,359 + 1.3
1,025,389 + 0.9
1,025,498 + -0.3
1,025,936 + 12337 mRNA_3969 0.44 -0.8
1,025,954 - 12337 mRNA_3969 0.46 1.7
1,026,107 + 12337 mRNA_3969 0.66 0.6
1,026,436 + 0.5
1,026,931 - 12338 mRNA_3970 0.59 0.3
1,026,931 + 12338 mRNA_3970 0.59 -0.4
1,026,953 + 12338 mRNA_3970 0.63 0.5
1,027,077 - 12338 mRNA_3970 0.82 -0.5
1,027,231 - 0.3
1,027,242 - 0.6
1,027,258 - 1.9