Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3949

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3948: 12316 - Hypothetical Protein, at 972401 to 974517 12316 mRNA_3949: 12317 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 974952 to 977086 12317 mRNA_3950: 12318 - K03456 PPP2R1 serine/threonine-protein phosphatase 2A regulatory subunit A, at 977447 to 979479 12318

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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974,192 - 12316 mRNA_3948 0.85 -0.4
974,229 - 12316 mRNA_3948 0.86 0.8
974,270 + 12316 mRNA_3948 0.88 -0.3
974,274 - 12316 mRNA_3948 0.88 0.3
974,727 - 1.0
975,035 - 0.3
975,334 + 12317 mRNA_3949 0.18 0.2
975,352 - 12317 mRNA_3949 0.19 -0.2
975,384 + 12317 mRNA_3949 0.20 0.1
975,444 - 12317 mRNA_3949 0.23 -0.6
975,461 - 12317 mRNA_3949 0.24 0.2
975,477 - 12317 mRNA_3949 0.25 -1.3
975,479 + 12317 mRNA_3949 0.25 0.5
975,794 - 12317 mRNA_3949 0.39 -0.8
975,815 + 12317 mRNA_3949 0.40 -0.6
975,881 - 12317 mRNA_3949 0.44 -0.8
977,058 - -1.7
977,122 - -1.0
977,180 + -0.0