Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3947

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967876 to 970743 12314 mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970867 to 972281 12315 mRNA_3948: 12316 - Hypothetical Protein, at 972401 to 974517 12316

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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970,443 - 12314 mRNA_3946 0.90 -1.9
970,448 + 12314 mRNA_3946 0.90 -1.1
970,456 - 12314 mRNA_3946 0.90 -2.1
970,596 + -0.4
970,727 + 2.0
970,730 - 0.4
970,740 + -0.5
970,740 - 0.0
970,744 + -0.8
970,784 + 0.6
970,790 + 0.8
970,791 - 0.8
970,795 - -0.3
970,799 - -0.1
970,817 + 1.5
970,818 - 0.4
970,825 + 1.5
970,914 - 0.8
970,947 + 0.1
971,098 - 12315 mRNA_3947 0.16 1.5
971,104 - 12315 mRNA_3947 0.17 1.1
971,104 - 12315 mRNA_3947 0.17 -0.7
971,121 + 12315 mRNA_3947 0.18 0.2
971,250 - 12315 mRNA_3947 0.27 1.0
971,667 - 12315 mRNA_3947 0.57 -0.1
971,677 + 12315 mRNA_3947 0.57 0.3
972,120 + 12315 mRNA_3947 0.89 -0.4
972,262 + -0.5
972,457 + -0.7
972,651 - 12316 mRNA_3948 0.12 -0.5