Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3925

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3924: 12292 - KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily), at 914570 to 918595 12292 mRNA_3925: 12293 - Hypothetical Protein, at 918753 to 919544 12293 mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919864 to 921279 12294

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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918,773 + -1.2
918,773 + 0.6
918,775 - 0.9
918,890 - 12293 mRNA_3925 0.17 0.1
918,895 + 12293 mRNA_3925 0.18 0.5
919,043 - 12293 mRNA_3925 0.37 0.5
919,361 - 12293 mRNA_3925 0.77 0.3
919,634 - 0.8
919,637 + 1.9
919,665 + 0.7
919,780 - -0.9
919,808 - 2.0
919,810 + 0.1
919,814 - -1.2
919,947 + 0.9
919,961 + 2.0
919,967 + 0.4
919,990 + -1.1
920,100 - 12294 mRNA_3926 0.17 0.5
920,102 + 12294 mRNA_3926 0.17 1.0
920,236 - 12294 mRNA_3926 0.26 0.5
920,419 + 12294 mRNA_3926 0.39 -0.8