Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3910

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872113 to 873418 12277 mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874209 to 878555 12278 mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878883 to 880998 12279

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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873,278 + 12277 mRNA_3909 0.89 -0.9
873,470 - 1.3
873,478 - 0.0
873,496 + 0.4
873,496 - 0.7
873,515 - -0.0
873,516 - -2.2
873,526 - 0.1
873,626 - 0.5
874,083 - 0.4
874,104 - -0.3
874,111 + -1.0
874,230 - -0.5
874,646 - 12278 mRNA_3910 0.10 0.9
874,833 - 12278 mRNA_3910 0.14 2.2
875,595 + 12278 mRNA_3910 0.32 -0.6
876,587 - 12278 mRNA_3910 0.55 1.0
876,915 - 12278 mRNA_3910 0.62 0.8
876,978 - 12278 mRNA_3910 0.64 -1.1
877,144 + 12278 mRNA_3910 0.68 0.8
877,194 + 12278 mRNA_3910 0.69 0.8
877,620 + 12278 mRNA_3910 0.78 -0.5
877,905 - 12278 mRNA_3910 0.85 -1.9
878,012 - 12278 mRNA_3910 0.87 0.2
878,142 + 0.1
878,284 + -0.6
878,492 - -0.1
878,526 + -1.0
878,636 + 0.8
878,638 - 1.8
878,645 - -1.1
878,665 + 1.3
878,667 + 0.2
878,788 - -0.8
878,791 - 0.4
878,791 - 0.7
878,796 + -0.4
878,797 + -1.3
878,805 - 0.7
878,806 + 1.1
878,827 - 0.4